Workshop 01 BIDM

1st International Workshop on Biological Data Management


Wednesday, September 3, 2003


10.30 - 12.30 Session 1


A Study of Multi-Ring Buffer Management for BLAST 

Melissa Lemos, Sergio Lifschitz


An algorithm for Generating Representative Functional Annotations Based on Gene Ontology

In-Yee Lee, Jan-Ming Ho, Wen-Chang Lin


Bionotes: A System for Biosequence Annotation

Melissa Lemos, Luiz Fernando Bessa Seibel, Marco Antonio Casanova


ConstDiff: Identification of Conserved Differences Between Sets of Amino Acid Sequences Saumil Mehta, Deedayal Dinakarpandian


12:30 14:00 Lunch


14.00 - 15.30 Session 2


Microarray Gene Expression Data Association Rules Mining Based on JXR-Tree

Xiang-Rong Jiang, Le Gruenwald


Efficient Mining from Heterogeneous Data Sets for Predicting Protein-Protein Interactions Hiroshi Mamitsuka


Having a BLAST: Analyzing Gene Sequence Data with BlastQuest

Willian Farmerie, Joachim Hammer, Li Liu, Markus Scheider


15.30 16.00 Coffee Break


16.00 - 18.00 Session 3


Structural Genomic Workflows Supported by Web Services

Maria Claudia Cavalcanti, Fernanda Baiao, Shaila Rossie, Paulo Bisch, Rafaeil Targino, Paulo Pires, Maria Campos, Marta Mattoso


Graphical  User Interface for Multiple Biological Databases

Parimala N.


Automatic Generation of Composite Wrappers for Semistructured Biological Data Based on Table Structure Identification

Liangyou Chen, Hasan Jamil, Nan Wang